Identifying solvent exposed hydrophobic residues from within a protein sequence, and compares them with those of closely related sequences, making it possible to select the optimal residues to target for site-directed mutagenesis.
Generate a pretty PostScript output from aligned sequences. Obtain coloring and residue grouping in the output from a similarity score calculated following several optinals algorithms. Take a PDB file with the 3D-coordinates of the first sequence in the aligment, in which case the ouput is enhanced with the secondary structure, solvent accessibility, and hydropathy.
An interface grouping seven programs: BLAST; MULTALIN/ CLUSTALW; DSSP; CNS; ESPript; BOBSCRIPT/ MOLSCRIPT; PHYLODENDRON. Aims to produce from a single PDB file, three PostScript figures containing most required sequence and structure information on a protein. Just upload your PDB and hit the RUN button.